Package index

All functions

ADEg ADEg-class add.ADEg,ADEg-method getcall,ADEg-method getlatticecall getlatticecall,ADEg-method getparameters getparameters,ADEg-method getstats getstats-methods getstats,ADEg-method gettrellis gettrellis-methods gettrellis,ADEg-method panelbase panelbase-methods panelbase,ADEg-method printSuperpose,ADEgORtrellis,ADEgORtrellis-method plot,ADEg-method plot,ADEg,ANY-method print,ADEg-method show,ADEg-method update,ADEg update,ADEg-method

Class ADEg

ADEg.C1 ADEg.C1-class panelbase,ADEg.C1-method gettrellis,ADEg.C1-method prepare,ADEg.C1-method setlatticecall,ADEg.C1-method

Class ADEg.C1

ADEg.S1 ADEg.S1-class prepare,ADEg.S1-method setlatticecall,ADEg.S1-method gettrellis,ADEg.S1-method panelbase,ADEg.S1-method

Class ADEg.S1

ADEg.S2 ADEg.S2-class prepare,ADEg.S2-method setlatticecall,ADEg.S2-method gettrellis,ADEg.S2-method panelbase,ADEg.S2-method

Class ADEg.S2

ADEg.T ADEg.T-class gettrellis,ADEg.T-method prepare,ADEg.T-method setlatticecall,ADEg.T-method panelbase,ADEg.T-method

Class ADEg.T

ADEg.Tr ADEg.Tr-class gettrellis,ADEg.Tr-method prepare,ADEg.Tr-method setlatticecall,ADEg.Tr-method panelbase,ADEg.Tr-method

Class "ADEg.Tr"

ADEgS-class $,ADEgS-method [,ADEgS,numeric,missing,logical-method [,ADEgS,numeric,missing,missing-method [[,ADEgS,numeric,missing-method [[,ADEgS,character,missing-method [[<-,ADEgS,numeric,missing,ADEg-method [[<-,ADEgS,numeric,missing,ADEgS-method getcall,ADEgS-method getgraphics getgraphics,ADEgS-method getpositions getpositions,ADEgS-method length,ADEgS-method names,ADEgS-method names<-,ADEgS,character-method show,ADEgS-method plot,ADEgS-method plot,ADEgS,ANY-method print,ADEgS-method update,ADEgS update,ADEgS-method

Class "ADEgS"

ADEgS()

Creation of ADEgS objects

C1.barchart C1.barchart-class prepare,C1.barchart-method panel,C1.barchart-method

Class C1.barchart

C1.curve C1.curve-class prepare,C1.curve-method panel,C1.curve-method C1.curves C1.curves-class panel,C1.curves-method

Class C1.curve

C1.density C1.density-class prepare,C1.density-method panel,C1.density-method

Class C1.density

C1.dotplot C1.dotplot-class prepare,C1.dotplot-method panel,C1.dotplot-method

Class C1.dotplot

C1.gauss C1.gauss-class prepare,C1.gauss-method panel,C1.gauss-method

Class C1.gauss

C1.hist C1.hist-class prepare,C1.hist-method panel,C1.hist-method

Class C1.hist

C1.interval C1.interval-class prepare,C1.interval-method panel,C1.interval-method

Class C1.interval

S1.boxplot S1.boxplot-class prepare,S1.boxplot-method panel,S1.boxplot-method setlatticecall,S1.boxplot-method

Class S1.boxplot

S1.class S1.class-class prepare,S1.class-method panel,S1.class-method

Class S1.class

S1.distri S1.distri-class prepare,S1.distri-method panel,S1.distri-method

Class S1.distri

S1.label S1.label-class prepare,S1.label-method panel,S1.label-method

Class S1.label

S1.match S1.match-class prepare,S1.match-method panel,S1.match-method

Class S1.match

S2.arrow S2.arrow-class prepare,S2.arrow-method panel,S2.arrow-method

Class S2.arrow

S2.class-class S2.class prepare,S2.class-method panel,S2.class-method

Class S2.class

S2.corcircle S2.corcircle-class prepare,S2.corcircle-method panel,S2.corcircle-method

Class S2.corcircle

S2.density S2.density-class prepare,S2.density-method panel,S2.density-method

Class S2.density

S2.distri S2.distri-class prepare,S2.distri-method panel,S2.distri-method

Class S2.distri

S2.image S2.image-class prepare,S2.image-method panel,S2.image-method

Class S2.image

S2.label S2.label-class prepare,S2.label-method panel,S2.label-method

Class S2.label

S2.logo S2.logo-class prepare,S2.logo-method panel,S2.logo-method

Class S2.logo

S2.match S2.match-class prepare,S2.match-method panel,S2.match-method

Class S2.match

S2.traject S2.traject-class prepare,S2.traject-method panel,S2.traject-method

Class S2.traject

S2.value S2.value-class prepare,S2.value-method panel,S2.value-method

Class S2.value

T.cont T.cont-class panel,T.cont-method

Class T.cont

T.image T.image-class prepare,T.image-method panel,T.image-method

Class T.image

T.value T.value-class prepare,T.value-method panel,T.value-method

Class T.value

Tr.class Tr.class-class prepare,Tr.class-method panel,Tr.class-method

Class Tr.class

Tr.label Tr.label-class prepare,Tr.label-method panel,Tr.label-method

Class Tr.label

Tr.match Tr.match-class prepare,Tr.match-method panel,Tr.match-method

Class Tr.match

Tr.traject Tr.traject-class prepare,Tr.traject-method panel,Tr.traject-method

Class Tr.traject

add.ADEg()

Superpose an new ADEg graph to the previous ones plotted

addhist()

Adds histograms and density lines against a bi-dimensional graphics.

addline()

Adds lines on graphics.

addpoint()

Adds points on graphics.

addsegment()

Adds segments on graphics.

addtext()

Adds labels on graphics.

adeg.panel.Spatial()

Panel function for adding spatial objects.

adeg.panel.hist()

Panel function for adding histograms.

adeg.panel.join()

Panel function for joining lines.

adeg.panel.label()

Panel function for adding labels.

adeg.panel.nb() adeg.panel.edges()

Panel functions for adding graphs.

adeg.panel.values()

Panel function drawing a third variable into a two-dimensional scatterplot

adegpar()

Handling ADEg graphical parameters

adegraphics-package adegraphics

Graphical objects for ade4 functions (and more)

cbindADEg() rbindADEg()

Combine ADEg objects by columns or rows

changelatticetheme()

Change the lattice theme used for adegraphics

getcall-methods getcall

Method for ADEg and ADEgS objects

insert()

Insert a graphic into an existing one

layout2position()

Transform a layout matrix into a position one

panel-methods panel

Methods panel for ADEg objects

kplot(<foucart>) kplot(<mcoa>) kplot(<mfa>) kplot(<mbpcaiv>) kplot(<pta>) kplot(<sepan>) kplotsepan.coa() kplot(<statis>) plot(<acm>) plot(<betcoi>) plot(<betdpcoa>) plot(<betwitdpcoa>) plot(<betrlq>) plot(<between>) plot(<coinertia>) plot(<discrimin>) plot(<dpcoa>) plot(<fca>) plot(<foucart>) plot(<krandboot>) plot(<krandxval>) plot(<mcoa>) plot(<mfa>) plot(<multiblock>) plot(<multispati>) plot(<niche>) plot(<pcaiv>) plot(<pta>) plot(<procuste>) plot(<randboot>) plot(<randxval>) plot(<rlq>) plot(<sepan>) plot(<statis>) plot(<witcoi>) plot(<witdpcoa>) plot(<within>) plot(<witrlq>) plot(<bcaloocv>) plot(<discloocv>) scatter(<dudi>) scatter(<coa>) scatter(<pco>) scatter(<nipals>) score(<acm>) score(<mix>) score(<pca>) screeplot(<dudi>) biplot(<dudi>)

Methods to display the outputs of an analysis performed with ade4

plot(<inertia>) score(<inertia>)

Display the decomposition of inertia which measure the contributions of rows/columns in mutivariate methods

plotEig()

Plot a barchart of eigen values

prepare-methods prepare

Methods prepare for ADEg objects

s.Spatial()

Mapping of a Spatial* object

s.arrow()

2-D scatter plot with arrows

s.class()

2-D scatter plot with a partition in classes (levels of a factor)

s.corcircle()

Correlation circle

s.density()

2-D scatter plot with kernel density estimation

s.distri()

2-D scatter plot with means/standard deviations computed using an external table of weights

s.image()

2-D scatter plot with loess estimation of an additional numeric score (levelplot)

s.label()

2-D scatter plot with labels

s.logo()

2-D scatter plot with logos (bitmap objects)

s.match()

2-D scatter plot of the matching between two sets of coordinates

s.traject()

2-D scatter plot with trajectories

s.value()

2-D scatter plot with proportional symbols (bubble plot)

s1d.barchart()

1-D plot of a numeric score by bars

s1d.boxplot()

1-D box plot of a numeric score partitioned in classes (levels of a factor)

s1d.class()

1-D plot of a numeric score partitioned in classes (levels of a factor)

s1d.curve()

1-D plot of a numeric score linked by curves

s1d.curves()

1-D plot of multiple scores linked by curves

s1d.density()

1-D plot of a numeric score by density curves

s1d.distri()

1-D plot of a numeric score by means/standard deviations computed using an external table of weights

s1d.dotplot()

1-D plot of a numeric score by dots

s1d.gauss()

1-D plot of a numeric score by Gaussian curves

s1d.hist()

1-D plot of a numeric score by bars

s1d.interval()

1-D plot of the interval between two numeric scores

s1d.label()

1-D plot of a numeric score with labels

s1d.match()

1-D plot of the matching between two numeric scores

setlimits1D() setlimits2D()

Computes limits for 1D and 2D displays.

sortparamADEg() sortparamADEgS()

Sort a sequence of graphical parameters

superpose() `+`(<ADEg>)

Superpose two graphics

table.image()

Heat map-like representation with colored cells

table.value()

Heat map-like representation with proportional symbols

triangle.class()

Ternary plot with a partition in classes (levels of a factor)

triangle.label()

Ternary plot with labels

triangle.match()

Ternary plot of the matching between two sets of coordinates

triangle.traject()

Ternary plot with trajectories

zoom()

Zoom in or out