Function reference • adespatial

All functions
`Cperiodogram()`	Contingency periodogram
`LCBD.comp()`	Compute LCBD from any D matrix
`ScotchWhiskey`	Scotch Whiskey Data Set
`TBI()`	TBI: Difference between multivariate observations at T1 and T2
`Tiahura`	Tiahura Transect Fish Data Set
`WRperiodogram()` `plot(<WRperio>)`	Whittaker-Robinson periodogram
`aem()`	Construct asymmetric eigenvector maps (AEM)
`aem.build.binary()`	Construct a site-by-edge binary matrix
`aem.time()`	AEM for time series
`aem.weight.edges()` `aem.weight.time()`	Weight edges when constructing AEM variables
`bacProdxy`	Bacterial production data set
`beta.div()`	Beta diversity computed as Var(Y)
`beta.div.comp()`	Decompose D in replacement and richness difference components
`chooseCN()`	Function to choose a connection network
`constr.hclust-class`	Class For Constrained Hiereachical Clustering
`constr.hclust()`	Space- And Time-Constrained Clustering
`create.dbMEM.model()`	Combine dbMEM matrices corresponding to groups of sites
`dbmem()`	dbMEM spatial eigenfunctions
`directional.response()`	Directional indices of community change
`dist.ldc()`	Dissimilarity matrices for community composition data
`envspace.test()`	Perform a test of the shared space-environment fraction of a variation partitioning using torus-translation (TT) or Moran Spectral Randomisation (MSR)
`forward.sel()`	Forward selection with multivariate Y using permutation under reducel model
`forward.sel.par()`	Parametric forward selection of explanatory variables in regression and RDA
`give.thresh()`	Compute the maximum distance of the minimum spanning tree based on a distance matrix
`global.rtest()`	Global and local tests
`listw.candidates()`	Function to create a list of spatial weighting matrices
`listw.explore()`	Interactive tool to generate R code that creates a spatial weighting matrix
`listw.select()`	Function to optimize the selection of a spatial weighting matrix and select the best subset of eigenvectors (MEM, Moran's Eigenvector Maps)
`mastigouche`	Mastigouche Lake network data set
`scores.listw()` `mem()` `orthobasis.listw()` `[`(<orthobasisSp>)	Function to compute and manage Moran's Eigenvector Maps (MEM) of a listw object
`mem.select()`	Selection of the best subset of spatial eigenvectors (MEM, Moran's Eigenvector Maps)
`mfpa()` `plot(<mfpa>)` `print(<mfpa>)`	Multi-frequential periodogram analysis
`moran.bounds()`	Function to compute extreme values of Moran's I
`moran.randtest()`	Function to compute Moran's index of spatial autocorrelation
`moranNP.randtest()`	Function to compute positive and negative parts of Moran's index of spatial autocorrelation
`mspa()` `scatter(<mspa>)` `print(<mspa>)`	Multi-Scale Pattern Analysis
`msr.4thcorner`	Moran spectral randomization for fourth-corner analysis
`msr()`	Moran spectral randomization
`msr(<mantelrtest>)`	Moran spectral randomization for Mantel test
`msr(<varipart>)`	Moran spectral randomization for variation partitioning
`mst.nb()`	Function to compute neighborhood based on the minimum spanning tree
`multispati()` `summary(<multispati>)` `print(<multispati>)` `plot(<multispati>)`	Multivariate spatial analysis
`ortho.AIC()`	Compute AIC for models with orthonormal explanatory variables
`orthobasis.poly()`	Function to compute polynomial of geographical coordinates
`plot(<TBI>)`	Plots of the outputs of a temporal beta diversity analysis
`plot(<constr.hclust>)`	Plotting Method For Space- And Time-Constrained Clustering
`plot(<orthobasisSp>)`	Function to display Moran's Eigenvector Maps (MEM) and other spatial orthogonal bases
`rotation()`	Rotate a set of point by a certain angle
`scalogram()` `plot(<scalogram>)`	Function to compute a scalogram
`stimodels()` `quicksti()`	Space-time interaction in ANOVA without replication
`test.W()`	Function to compute and test eigenvectors of spatial weighting matrices
`tpaired.krandtest()`	Paired t-tests of differences between T1 and T2 for each species
`tpaired.randtest()`	Permutational paired t-test
`trichoptera`	Trichoptera data set
`variogmultiv()`	Function to compute multivariate empirical variogram

Reference

All functions