Skip to contents

Phylogeny and trait of bacteria

njplot.Rd

This data set describes the phylogeny of 36 bacteria as reported by Perrière and Gouy (1996). It also gives the GC rate corresponding to these 36 species.

Usage

data(njplot)

Format

njplot is a list containing the 2 following objects:

tre

is a character string giving the fission tree in Newick format.

tauxcg

is a numeric vector that gives the CG rate of the 36 species.

Source

Data were obtained by Manolo Gouy manolo.gouy@univ-lyon1.fr

References

Perrière, G. and Gouy, M. (1996) WWW-Query : an on-line retrieval system for biological sequence banks. Biochimie, 78, 364–369.

Examples

data(njplot)
njplot.phy <- newick2phylog(njplot$tre)
par(mfrow = c(2,1))
tauxcg0 <- njplot$tauxcg - mean(njplot$tauxcg)
symbols.phylog(njplot.phy, squares = tauxcg0)
symbols.phylog(njplot.phy, circles = tauxcg0)

par(mfrow = c(1,1))