K-tables Correspondence Analysis with the same rows and the same columns

K tables have the same rows and the same columns.
Each table is transformed by P = X/sum(X). The average of P is computing.
A correspondence analysis is realized on this average.
The initial rows and the initial columns are projected in supplementary elements.

Usage

foucart(X, scannf = TRUE, nf = 2)
# S3 method for class 'foucart'
plot(x, xax = 1, yax = 2, clab = 1, csub = 2, 
    possub = "bottomright", ...) 
# S3 method for class 'foucart'
print(x, ...)

Arguments

X: a list of data frame where the row names and the column names are the same for each table
scannf: a logical value indicating whether the eigenvalues bar plot should be displayed
nf: if scannf FALSE, an integer indicating the number of kept axes

x: an object of class 'foucart'
xax: the column number of the x-axis
yax: the column number of the y-axis
clab: if not NULL, a character size for the labels, used with par("cex")*clab
csub: a character size for the legend, used with par("cex")*csub
possub: a string of characters indicating the sub-title position ("topleft", "topright", "bottomleft", "bottomright")
...: further arguments passed to or from other methods

Value

foucart returns a list of the classes 'dudi', 'coa' and 'foucart'

call: origine
nf: axes-components saved
rank: rank
blo: useful vector
cw: vector: column weights
lw: vector: row weights
eig: vector: eigen values
tab: data.frame: modified array
li: data.frame: row coordinates
l1: data.frame: row normed scores
co: data.frame: column coordinates
c1: data.frame: column normed scores
Tli: data.frame: row coordinates (each table)
Tco: data.frame: col coordinates (each table)
TL: data.frame: factors for Tli
TC: data.frame: factors for Tco

References

Foucart, T. (1984) Analyse factorielle de tableaux multiples, Masson, Paris.

Author

Pierre Bady pierre.bady@univ-lyon1.fr
Anne-Béatrice Dufour anne-beatrice.dufour@univ-lyon1.fr

Examples

data(bf88)
fou1 <- foucart(bf88, scann = FALSE, nf = 3)
fou1
#> Foucart's  COA
#> class: foucart coa dudi
#> $call: foucart(X = bf88, scannf = FALSE, nf = 3)
#> table  number: 6 
#> 
#> $nf: 3 axis-components saved
#> $rank: 3
#> eigen values: 0.5278 0.3591 0.3235
#> blo    vector       6      blocks
#>  vector length mode    content       
#>  $cw    4      numeric column weights
#>  $lw    79     numeric row weights   
#>  $eig   3      numeric eigen values  
#> 
#>  data.frame nrow ncol content             
#>  $tab       79   4    modified array      
#>  $li        79   3    row coordinates     
#>  $l1        79   3    row normed scores   
#>  $co        4    3    column coordinates  
#>  $c1        4    3    column normed scores
#> 
#>      **** Intrastructure ****
#> 
#>  data.frame nrow ncol content                     
#>  $Tli       474  3    row coordinates (each table)
#>  $Tco       24   3    col coordinates (each table)
#>  $TL        474  2    factors for Tli             
#>  $TC        24   2    factors for Tco             
#> 
plot(fou1)
#> Error in s.label(dfxy = fou1$li, xax = 1, yax = 2, plot = FALSE, storeData = TRUE,     pos = -3, psub = list(text = "Rows (Base)"), xlim = c(-1.86402627934217,     1.65117536933363), ylim = c(-1.70842679418408, 1.80677485449172    ), plabels = list(cex = 1.25)): non convenient selection for dfxy (can not be converted to dataframe)

data(meaudret)
l1 <- split(meaudret$spe, meaudret$design$season)
l1 <- lapply(l1, function(x) 
    {row.names(x) <- paste("Sit",1:5,sep="");x})
fou2 <- foucart(l1, scan = FALSE)

if(adegraphicsLoaded()) {
  kplot(fou2, row.plabels.cex = 2)
} else {
  kplot(fou2, clab.r = 2)
}
#> Error in s.label(dfxy = fou2$Tli, facets = fou2$TL[, 1], xax = 1, yax = 2,     plot = FALSE, storeData = TRUE, pos = -3, plabels = list(        cex = 1), xlim = c(-1.44332717078107, 1.56353854303784    ), ylim = c(-1.54372648934993, 1.46313922446898), plabels = list(        cex = 1.25), clab = list(r = 2)): non convenient selection for dfxy (can not be converted to dataframe)