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Monte-Carlo Test on the between-groups inertia percentage (in R).

rtest.between.Rd

Performs a Monte-Carlo test on the between-groups inertia percentage.

Usage

# S3 method for between
rtest(xtest, nrepet = 99, ...)

Arguments

xtest

an object of class between

nrepet

the number of permutations

...

further arguments passed to or from other methods

Value

a list of the class rtest

Author

Daniel Chessel

References

Romesburg, H. C. (1985) Exploring, confirming and randomization tests. Computers and Geosciences, 11, 19--37.

Examples

data(meaudret)
pca1 <- dudi.pca(meaudret$env, scan = FALSE, nf = 3)
rand1 <- rtest(bca(pca1, meaudret$design$season, scan = FALSE), 99)
rand1
#> Monte-Carlo test
#> Call: rtest.between(xtest = bca(pca1, meaudret$design$season, scan = FALSE), 
#>     nrepet = 99)
#> 
#> Observation: 0.3722686 
#> 
#> Based on 99 replicates
#> Simulated p-value: 0.02 
#> Alternative hypothesis: greater 
#> 
#>     Std.Obs Expectation    Variance 
#> 3.539070250 0.154138727 0.003798849 
plot(rand1, main = "Monte-Carlo test")